Published Data

Name	Last modified	Size	Description
monocle_2.3.5.tar.gz	30-Jun-2017 13:02	1.3M	Source code for Monocle version 2.3.5, the version used in Cao et al.
Cao_et_al_2017_vignette.ipynb	30-Jun-2017 13:02	1.9M	A Jupyter notebook that shows examples of how to work with the Cao et al. C. elegans data. It has the same code that's shown in the "Documentation" tab of this website.
Cao_et_al_2017_vignette.RData	17-Aug-2017 11:31	260M	An RData file that contains all the data and utility functions used in Cao_et_al_2017_vignette.ipynb.
Gene.count.matrix.celegans.cell.Rdata	27-Jun-2017 11:50	45M	Gene-by-cell UMI count matrix for C. elegans cells from the first C. elegans experiment in Cao et al. See Table S1 experiment #3 for details.
Gene.count.matrix.celegans.cell.2.Rdata	27-Jun-2017 11:50	7.1M	Gene-by-cell UMI count matrix for C. elegans cells from the second C. elegans experiment in Cao et al. See Table S1 experiment #6 for details.
gene_count_UMI_293T_celegans_first.RData	27-Jun-2017 11:51	1.8M	Gene-by-cell UMI count matrix for control mouse cells from the first C. elegans experiment in Cao et al. See Table S1 experiment #3 for details.
gene_count_UMI_293T_celegans_second.RData	27-Jun-2017 11:51	1.0M	Gene-by-cell UMI count matrix for control mouse cells from the second C. elegans experiment in Cao et al. See Table S1 experiment #6 for details.
Gene.count.matrix.human.mouse.1.Rdata	27-Jun-2017 11:51	154M	Gene-by-cell UMI count matrix for the first human and mouse cell experiment in Cao et al. See Table S1 experiment #1 for details.
Gene.count.matrix.human.mouse.2.Rdata	27-Jun-2017 11:51	24M	Gene-by-cell UMI count matrix for the second human and mouse cell experiment in Cao et al. See Table S1 experiment #2 for details.
Gene.count.matrix.human.mouse.3.Rdata	27-Jun-2017 11:51	11M	Gene-by-cell UMI count matrix for the third human and mouse cell experiment in Cao et al. See Table S1 experiment #4 for details.
Gene.count.matrix.human.mouse.4.Rdata	27-Jun-2017 11:51	3.5M	Gene-by-cell UMI count matrix for the fourth human and mouse cell experiment in Cao et al. See Table S1 experiment #5 for details.
Gene.count.matrix.human.mouse.5.Rdata	27-Jun-2017 11:51	2.3M	Gene-by-cell UMI count matrix for the fifth human and mouse cell experiment in Cao et al. See Table S1 experiment #7 for details.
Gene.count.matrix.bulk.293T.Rdata	27-Jun-2017 11:50	1.2M	Gene-by-sample UMI count matrix for bulk RNA-seq experiment of 293T cells in Cao et al.